HsaALTA1046829-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr3:49684861-49685090:-
Coord C1 exon
chr3:49685012-49685090
Coord A exon
NA
Coord C2 exon
chr3:49684861-49684884
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TAGCAGAGCTTCTCTCCCAGCCA
3' ss Score
-1.07
Exon sequences
Seq C1 exon
GGCAGGGCCAGCATTTCTGCGGGGGGTCTCTAGTGAAGGAGCAGTGGATACTGACTGCCCGGCAGTGCTTCTCCTCCTG
Seq A exon
NA
Seq C2 exon
CCATATGCCTCTCACGGGCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531-33-34,33-33-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(2.4=14.8)
A:
NA
C2:
PF0008921=Trypsin=FE(22.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGCCAGCATTTCTG
R:
TAGCCCGTGAGAGGCATATGG
Band lengths:
99-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains