HsaALTA1046829-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr3:49684861-49685090:-
Coord C1 exon
chr3:49685012-49685090
Coord A exon
chr3:49684885-49684955
Coord C2 exon
chr3:49684861-49684884
Length
71 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CCACCTTCCCCCTTCCCCAGGCA
3' ss Score
10.91
Exon sequences
Seq C1 exon
GGCAGGGCCAGCATTTCTGCGGGGGGTCTCTAGTGAAGGAGCAGTGGATACTGACTGCCCGGCAGTGCTTCTCCTCCTG
Seq A exon
GCAAGCTAACAAGTGAGCCTTGGGGCAATGGACTGAGAGTCACAAATGACCTAGCAGAGCTTCTCTCCCAG
Seq C2 exon
CCATATGCCTCTCACGGGCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531-33-34,33-33-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(2.4=14.8)
A:
NA
C2:
PF0008921=Trypsin=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGCCAGCATTTCTG
R:
TAGCCCGTGAGAGGCATATGG
Band lengths:
99-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains