HsaINT1023631 @ hg38
Intron Retention
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr3:49684738-49685089:-
Coord C1 exon
chr3:49685012-49685089
Coord A exon
chr3:49684885-49685011
Coord C2 exon
chr3:49684738-49684884
Length
127 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TAGCAGAGCTTCTCTCCCAGCCA
3' ss Score
-1.07
Exon sequences
Seq C1 exon
GCAGGGCCAGCATTTCTGCGGGGGGTCTCTAGTGAAGGAGCAGTGGATACTGACTGCCCGGCAGTGCTTCTCCTCCTG
Seq A exon
GTGAGCCTCCCTTGTGTTTGGGGACCCAGTCTCATCCCACCTTCCCCCTTCCCCAGGCAAGCTAACAAGTGAGCCTTGGGGCAATGGACTGAGAGTCACAAATGACCTAGCAGAGCTTCTCTCCCAG
Seq C2 exon
CCATATGCCTCTCACGGGCTATGAGGTATGGTTGGGCACCCTGTTCCAGAACCCACAGCATGGAGAGCCAAGCCTACAGCGGGTCCCAGTAGCCAAGATGGTGTGTGGGCCCTCAGGCTCCCAGCTTGTCCTGCTCAAGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531:ENST00000449682:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(2.4=14.8)
A:
NA
C2:
PF0008921=Trypsin=FE(19.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGCCAGCATTTCTG
R:
CTTGAGCAGGACAAGCTGGG
Band lengths:
217-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains