MmuINT0101358 @ mm10
Intron Retention
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108083864-108084207:+
Coord C1 exon
chr9:108083864-108083941
Coord A exon
chr9:108083942-108084060
Coord C2 exon
chr9:108084061-108084207
Length
119 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
GCAGAGTCTCTTTCTCCCAGCCA
3' ss Score
2.51
Exon sequences
Seq C1 exon
ACAGGGCCAGCATTTCTGTGGGGGCTCCCTAGTGAAGGAGCAGTGGGTACTGACTGCCCGGCAATGCATCTGGTCATG
Seq A exon
GTGAGCAGACTGGGGACTCCTAGCCTACCTCTCCCTGCCATTGTCTGTCCCACAAGCAAACTAAATTGTGACAGCTGATTGGGAGTCAAGCATGAACTAGCAGAGTCTCTTTCTCCCAG
Seq C2 exon
CCACGAACCTCTCACAGGATACGAGGTATGGTTGGGTACAATTAACCAGAACCCACAGCCTGGAGAGGCAAACCTGCAGAGGGTCCCAGTGGCCAAGGCAGTGTGCGGCCCTGCAGGCTCCCAGCTTGTTCTGCTCAAGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591:ENSMUST00000035211:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGGCCAGCATTTCTGTG
R:
CTCTCCAGCTTGAGCAGAACA
Band lengths:
225-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types