RnoINT0094898 @ rn6
Intron Retention
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116861109-116861507:+
Coord C1 exon
chr8:116861109-116861186
Coord A exon
chr8:116861187-116861360
Coord C2 exon
chr8:116861361-116861507
Length
174 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
GCAGAGTCTCTTTCTCCCAGCCA
3' ss Score
2.51
Exon sequences
Seq C1 exon
ACAGGGCCAGCATTTCTGTGGGGGTTCCCTAGTGAAGGAGCAGTGGGTACTGACCGCCCGGCAATGCATCTGGTCATG
Seq A exon
GTGAGCCTCGCTTGGGTTTAGGAACTGGGACTCCTAGCCTACCTTCAGCCTCCCTCCCTGCCACTGTCTGTCCCCACCACCCCAGCCACTTTCCTTTGGCAAGCCAACAAGCAAACTAAATTGGGACAGCTGATTAGGTGTCAAGAATGATCTAGCAGAGTCTCTTTCTCCCAG
Seq C2 exon
CCATGATCCTCTCACAGGATATGAGGTATGGTTGGGTACAATTAACCAGAACCCACAGCCTGGAGAAGCAAACCTGCAGAGGGTCTCAGTGGCCAAGACAGTGTGCGGACCTGCAGGCTCCCAACTTGTTCTGCTCAAGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680:ENSRNOT00000026711:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATTTCTGTGGGGGTTCC
R:
CTCTCCAGCTTGAGCAGAACA
Band lengths:
218-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]