GgaINT1018299 @ galGal4
Intron Retention
Gene
ENSGALG00000002722 | MST1
Description
hepatocyte growth factor-like protein precursor [Source:RefSeq peptide;Acc:NP_990544]
Coordinates
chr12:2482268-2482556:+
Coord C1 exon
chr12:2482268-2482345
Coord A exon
chr12:2482346-2482409
Coord C2 exon
chr12:2482410-2482556
Length
64 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CTGATGGCCCTGTCCTGCAGTGA
3' ss Score
6.81
Exon sequences
Seq C1 exon
GGCCGGCTTGCACTTCTGCGGTGGGTCGCTGGTGAAGGAGCAGTGGGTGATCAGCACGCAGCAGTGCTTCTCCTCCTG
Seq A exon
GTGAGCTCAGGGGCAGGGTGCGGGGTGCCAGCAGCTGCCGTACCCTGATGGCCCTGTCCTGCAG
Seq C2 exon
TGATGCGGACCTGTCAGGCTATGAGGTGCACCTGGGGACGCTGTTCAAGGACCCCAGCCCCACCGACCCTGACCTGCAGGCCATCCCGATTGTACGCATCATCTGTGGCCCTTCTGAGTCCCACTTGGTGCTGCTGAAGCTGGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722:ENSGALT00000004292:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGAGCAGTGGGTGATCA
R:
TGATGCGTACAATCGGGATGG
Band lengths:
147-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]