BtaALTA0019076-4/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000018204 | MYH1
Description
Bos taurus myosin, heavy chain 1, skeletal muscle, adult (MYH1), mRNA. [Source:RefSeq mRNA;Acc:NM_174117]
Coordinates
chr19:30132692-30134757:-
Coord C1 exon
chr19:30134735-30134757
Coord A exon
chr19:30132791-30132935
Coord C2 exon
chr19:30132692-30132790
Length
145 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ATGTTTTCTTCCTCTGCCAGGCA
3' ss Score
9.51
Exon sequences
Seq C1 exon
CACTTCAAGGTTGCATCTCCAAG
Seq A exon
GCAGGGTCTTTGATTGGGCTGCCATCAATAAACTGCAGCCATGAGTTCAGACCAGGAAATGGCTGTTTTTGGGGAGGCCGCTCCTTACCTCCGAAAGTCTGAAAAGGAGCGCATTGAGGCCCAGAATAAGCCTTTCGATGCCAAG
Seq C2 exon
ACCTCAGTCTTCGTGGCGGACCCTAAGGAGTCCTTCGTGAAAGCAACTGTGCAGAGCAGGGAAGGGGGGAAGGTGACGGCCAAGACCGAGGCTGGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018204-0-4,0-3,0-2,0-1-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.176
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=48.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCAAGGTTGCATCTCCA
R:
CCCCAGCCTCGGTCTTGG
Band lengths:
120-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development