Special

MmuALTA0011531-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67013912-67015587:+
Coord C1 exon
chr11:67013912-67013944
Coord A exon
chr11:67015344-67015347
Coord C2 exon
chr11:67015348-67015587
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ACCATTTCTCTCTCTGCCAGGCA
3' ss Score
10.19
Exon sequences
Seq C1 exon
TTTGGACCCACGGTCGAAGTTGCATCCCTAAAG
Seq A exon
GCAG
Seq C2 exon
GCTCTCTCACTGGGCTGCAACCAATAGCCCGCAGCCATGAGTTCCGACGCCGAGATGGCCGTTTTCGGGGAGGCTGCTCCTTACCTCCGGAAGTCTGAAAAGGAGCGAATCGAGGCTCAGAACAAGCCTTTTGACGCCAAGTCATCGGTGTTTGTGGTGGATGCTAAGGAGTCTTTTGTAAAAGCAACGGTGCAGAGCAGGGAAGGGGGGAAGGTGACAGCCAAGACCGAAGGCGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-1-4,1-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.229
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF0273614=Myosin_N=PU(78.6=48.5)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000075147





     
                   









    
Main Skipping Isoform:
ENSMUSP00000018637





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000115583, ENSMUSP00000117569, ENSMUSP00000131057
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr17:10516439-10516682 
HIGH PSI
HsaALTA1015156-2/2
(MYH1)
Human
(hg19)
chr17:10420000-10420001 
Rat
(rn6)
chr10:53742519-53742699 
ALTERNATIVE
RnoALTA0025205-2/2
(Myh1)
Cow
(bosTau6)
chr19:30132692-30132935 
HIGH PSI
BtaALTA0019076-4/4
(MYH1)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr18:454312-454313 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ACGGTCGAAGTTGCATCCCTA

				
R: 
GAGCAGCCTCCCCGAAAAC

				
Band lengths: 
103-107

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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