HsaALTA1015156-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000109061 | MYH1
Description
myosin heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:7567]
Coordinates
chr17:10516439-10518270:-
Coord C1 exon
chr17:10518240-10518270
Coord A exon
chr17:10516679-10516682
Coord C2 exon
chr17:10516439-10516678
Length
4 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
TTCTTTTCTTCCTCTCCCAGCCA
3' ss Score
9.23
Exon sequences
Seq C1 exon
TTCTGATCCACTTTAAGGTCGCATCTCTACG
Seq A exon
CCAG
Seq C2 exon
GGTCCTTAACTGGGCTACCATCAATAACCTGCAGCCATGAGTTCCGACTCTGAGATGGCCATTTTTGGGGAGGCTGCTCCTTTCCTCCGAAAGTCTGAAAGGGAGCGAATTGAAGCCCAGAACAAGCCTTTTGATGCCAAGACATCAGTCTTTGTGGTGGACCCTAAGGAGTCCTTTGTGAAAGCAACAGTGCAGAGCAGGGAAGGGGGGAAGGTGACAGCTAAGACCGAAGCTGGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109061-2-2,2-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.162
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=48.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATCCACTTTAAGGTCGCA
R:
ATGGCCATCTCAGAGTCGGAA
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains