RnoALTA0025205-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53741112-53742699:+
Coord C1 exon
chr10:53741112-53741144
Coord A exon
chr10:53742519-53742522
Coord C2 exon
chr10:53742523-53742699
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ACCATTTCTCCCTCTGCCAGGCA
3' ss Score
9.52
Exon sequences
Seq C1 exon
TTCAGACCCACGGTCGAAGTTGCATCCCTAAAG
Seq A exon
GCAG
Seq C2 exon
ACTCTCCCACTGGGCTGCCCCCAATAGCCCGCAGCCATGAGTTCCGACGCCGAGATGGCCGTTTTCGGGGAGGCTGCTCCTTACCTCCGGAAGTCTGAAAAGGAGCGAATCGAGGCTCAGAACAAGCCTTTTGATGCCAAGTCATCCGTGTTTGTGGTGGATGCTAAGGAGTCTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695-40-48,40-47-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.191
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=48.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTCGAAGTTGCATCCCTA
R:
GAGCAGCCTCCCCGAAAAC
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]