BtaALTA0020381-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34405881-34407895:-
Coord C1 exon
chr26:34407791-34407895
Coord A exon
chr26:34405983-34405985
Coord C2 exon
chr26:34405881-34405982
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GACATTGGTCTCACCAACAGGAG
3' ss Score
7.65
Exon sequences
Seq C1 exon
AGAGCCTATTGGAGTGGATACAGGGAAGGGGACGCCTGGTGCCCAGGAGCTCTTCCAGACCCTGAAATCGTAAGGATGGTGGAGGCACGAAAGTCACTGGGTGAG
Seq A exon
GAG
Seq C2 exon
TATCCAGAAGACTATGAGCAACAGAGAGGAAAAGGGAGTTTTCCAGCCATGATCACACCTGCTTATCAAAGGGCCAAGATCGCCAACCAGCTGGCCAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327-5-6,5-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.514
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTAAGGATGGTGGAGGCA
R:
AAGCAGGTGTGATCATGGCTG
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development