MmuALTA0012236-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56382260-56384163:-
Coord C1 exon
chr19:56384059-56384163
Coord A exon
NA
Coord C2 exon
chr19:56382260-56382364
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GCCGTGGTTCTGACCAGCAGGGG
3' ss Score
4.66
Exon sequences
Seq C1 exon
AGAGACTACTGGCCAGGGTATGCAGAAGGGAACACTTGGTGTCCAGGAGCTCTGCCGGACCCTGAGATTGTAAGGATGGTTGAAGCTCGACAGTCTCTCGGTGAG
Seq A exon
NA
Seq C2 exon
GGGTACACAGAAGACCGTGAACAGCAGCAGGGCAAGGGGAGCTTTCCAGCCATGATCACCCCTGCCTACCAAAGGGCCAAGGCAGCCAACCAGCTGGCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134-5-7,5-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.322 A=NA C2=0.743
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACTTGGTGTCCAGGAGC
R:
CTGCTGTTCACGGTCTTCTGT
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types