RnoALTA0026966-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277172504-277174373:-
Coord C1 exon
chr1:277174269-277174373
Coord A exon
NA
Coord C2 exon
chr1:277172504-277172608
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GCTGTGGTTCTGACCAGCAGGGG
3' ss Score
4.02
Exon sequences
Seq C1 exon
AGAGATTACTGGCCAGGGTATGGAGAAGGGAACACTTGGTGTCCAGGAGCTCTTCCAGACCCTGAGATTGTAAGGATGGTTGAAGCTCGACAGTCTCTCCGTGAG
Seq A exon
NA
Seq C2 exon
GGGTACACAGAAGATGGTGAGCAACCGCAAGGCAAAGGGAGCTTCCCAGCCATGATCACCCCTGCCTACCAACGGGCCAAGGCAGCCAACCAGCTGGCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714-5-5,5-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=NA C2=0.743
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCTCGACAGTCTCTCCG
R:
TTGGTAGGCAGGGGTGATCAT
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]