RnoEX0060906 @ rn6
Exon Skipping
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277170421-277174373:-
Coord C1 exon
chr1:277174269-277174373
Coord A exon
chr1:277171754-277171858
Coord C2 exon
chr1:277170421-277170528
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACTCAGTTTCTCCTCATCAGGTG
3' ss Score
6.9
5' ss Seq
GATGTAAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
AGAGATTACTGGCCAGGGTATGGAGAAGGGAACACTTGGTGTCCAGGAGCTCTTCCAGACCCTGAGATTGTAAGGATGGTTGAAGCTCGACAGTCTCTCCGTGAG
Seq A exon
GTGCAATACAAGAGAGGCCACGATGAACGGGTCTCCACGTTCACTCCGGTGGCAGACACTCCCGAGCTGCTACGGGCCAATGCTGGGGGACAGCTTCAAAATGAT
Seq C2 exon
GTGAGATACACGGAAGACGGAGGGCAGCAGAGAGGGAAAGGCAGTTTCCCTGCTATGATCACACCAGCGTATCAGATAGCCAAAAGAGCCGCCGAGCTGGCCAGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=1.000 C2=0.528
Domain overlap (PFAM):
C1:
NO
A:
PF0088013=Nebulin=PD(37.9=31.4)
C2:
PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATTACTGGCCAGGGTATG
R:
CAGCTCGGCGGCTCTTTTG
Band lengths:
204-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]