MmuEX6033761 @ mm9
Exon Skipping
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56454696-56456854:-
Coord C1 exon
chr19:56456750-56456854
Coord A exon
chr19:56455990-56456094
Coord C2 exon
chr19:56454696-56454803
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACTCAGTTTTTCCTTATCAGGTA
3' ss Score
8
5' ss Seq
GACGTAAGA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GGGTACACAGAAGACCGTGAACAGCAGCAGGGCAAGGGGAGCTTTCCAGCCATGATCACCCCTGCCTACCAAAGGGCCAAGGCAGCCAACCAGCTGGCCAGCCAG
Seq A exon
GTACAATACAAGAGAGGCCACGATGAGCGGGTCTCCACATTCACTCCAGTGGCGGACACGCCCGAGCTGCTCCGTGCCAAAGCTGGGGGACAGCTTCAAAATGAC
Seq C2 exon
GTGAGGTACACAGAAGACGGTGGGCAGCAGAGAGGGAAAGGCAGTTTTCCTGCTATGATCACACCAGCTTATCAGATAGCCAAAAGGGCCACTGAGCTGGCGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.743 A=1.000 C2=0.528
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTACACAGAAGACCGTGAAC
R:
ATCACTCGCCAGCTCAGTGG
Band lengths:
213-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: