BtaEX6100907 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34403802-34405985:-
Coord C1 exon
chr26:34405881-34405985
Coord A exon
chr26:34405078-34405182
Coord C2 exon
chr26:34403802-34403909
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCGTGCTGTCTCTTCGCCAGGTG
3' ss Score
9.3
5' ss Seq
GATGTAAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GAGTATCCAGAAGACTATGAGCAACAGAGAGGAAAAGGGAGTTTTCCAGCCATGATCACACCTGCTTATCAAAGGGCCAAGATCGCCAACCAGCTGGCCAGCCAA
Seq A exon
GTGGAGTACAAGAGAGGGCATGATGAGCGCATCTCCAGGTTCAGCACGGTGGCGGATACCCCCGAGCTGCTCCGGGCCAAGGCTGGTGGACAGCTTCAAAGTGAT
Seq C2 exon
GTGAGATACACAGAGGCCTATGAACAGCAGAGAGGGAAAGGCAGTTTTCCTGCTATGATCACACCTGCTTATCAGATAGCCAAAAGAGCCAACGAGCTGGCAAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327-'6-8,'6-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=0.629 C2=0.361
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATCCAGAAGACTATGAGCAACA
R:
ATCACTTGCCAGCTCGTTGG
Band lengths:
212-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]