GgaEX1040321 @ galGal3
Exon Skipping
Gene
ENSGALG00000008914 | NRAP
Description
NA
Coordinates
chr6:28954169-28955934:-
Coord C1 exon
chr6:28955830-28955934
Coord A exon
chr6:28954900-28955004
Coord C2 exon
chr6:28954169-28954276
Length
105 bp
Sequences
Splice sites
3' ss Seq
TATACGTATCCTTCCCCCAGGTG
3' ss Score
11.08
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
CAATATACAGAAGAATATGAGCTGCGTCAAGGCAAAGGCAGCTTTCCTGCTATGATCACTCCAGGTTATCAGGTGGCTAAGAGAGCCACTCAACTAAGCAGTAAT
Seq A exon
GTGGAATATAGGCGGGGACATGAAGAGAGAGTTTCAAAGTTCACCTCTGTTGTAGACACTCCAGATATACTTCACGCAAAGGCTGGAGGGCAGCTTGCAAGTGAT
Seq C2 exon
TTGAAATACACTGAAGACTTTGAAGAACAGAGAGGGAAAGGCAGCTTTCCTGCTATGATCACTCCAGCTTATCAAATTGCCAAGAGAGCAAATGAATTAGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914-'3-3,'3-2,4-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.371 C2=0.306
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATACAGAAGAATATGAGCTGCGTCA
R:
ATCACTGGCTAATTCATTTGCTCTCT
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]