DreEX6069952 @ danRer10
Exon Skipping
Gene
ENSDARG00000009341 | nrap
Description
nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
Coordinates
chr12:30475953-30477946:+
Coord C1 exon
chr12:30475953-30476057
Coord A exon
chr12:30476153-30476257
Coord C2 exon
chr12:30477839-30477946
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTGGACATTTGGGTTGCAGGTG
3' ss Score
6.82
5' ss Seq
GATGTAAGG
5' ss Score
6.35
Exon sequences
Seq C1 exon
CAAGGTTACCAAACTGAATTTGTGGGCCAGCAGTCATTTTACTCAGGCAGTGTGACGAGCCAGGAGATTGTACGTGTGTCCCAAACACAGAAGACCATTAGTGAC
Seq A exon
GTGGAATATAAACGAGGCCATGAAACGCGCATGTTGCAGTTTACTTCTGTTGCAGACTCACCTGAGGTGTTGCATGCCAAGACTGGAGTCTCATTGGCCAGTGAT
Seq C2 exon
GTGAAATACACAGAAGAATATGAGCAGTCTAAAGGAAAAGGCAGTTTCCCAGCCATGATCACCCCAGGATATGAAATGGCAAAAAAAGCCAATACACTGGCTAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009341-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.200 C2=0.250
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(56.5=37.1)
A:
PF0088013=Nebulin=PD(34.8=22.9),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTACCAAACTGAATTTGTGGGC
R:
TTTTGCCATTTCATATCCTGGGGT
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]