BtaALTA0020508-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000015437 | NTMT1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23373]
Coordinates
chr11:100047576-100048752:+
Coord C1 exon
chr11:100047576-100047789
Coord A exon
chr11:100048500-100048503
Coord C2 exon
chr11:100048504-100048752
Length
4 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
3' ss Seq
TGTCTTCTCTGCTGCTTCAGGAA
3' ss Score
9.45
Exon sequences
Seq C1 exon
GAACCACCAGTGCTGAGTTTGGTGCCTGGGCAGAGACGCGGCTGCTGACAGCATGACGAGCGAGGTGATCGAGGACGAGAAGCAGTTCTACTCCAAGGCCAAGACGTACTGGAAGGAGGTCCCTGCCACCGTGGACGGCATGCTCGGGGGGTATGGCCACATCTCCAGCATCGACATCAACAGCTCCCGGAAGTTCCTGCAGAGGTTTCTGAGG
Seq A exon
GAAG
Seq C2 exon
GCCCGAACAAGACGGGGACCTCATACGCCCTGGACTGCGGAGCCGGCATTGGGAGGATCACCAAGCGGCTGCTCTTGCCTCTCTTTGGAGTGGTGGACATGGTGGATGTAACAGAGGACTTCCTGGTCAAGGCTAAGACCTACCTGGGCGAGGAGGGCAAGAGAGTGAGGAACTTCTTCTGCTGCGGCCTGCAGGACTTCAGCCCCGAGCCACAGTCCTACGATGTGATCTGGATCCAGTGGGTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015437-15-3,15-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(21.3=85.2)
A:
NA
C2:
PF058917=Methyltransf_PK=FE(38.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCAACAGCTCCCGGAAG
R:
CTTGGTGATCCTCCCAATGCC
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development