GgaALTA1019670-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000017611 | METTL11A
Description
alpha N-terminal protein methyltransferase 1A [Source:RefSeq peptide;Acc:NP_001264618]
Coordinates
chr17:5644397-5644906:+
Coord C1 exon
chr17:5644397-5644592
Coord A exon
chr17:5644739-5644831
Coord C2 exon
chr17:5644832-5644906
Length
93 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
CCTCACCATTGTCACTCCAGGAT
3' ss Score
7.02
Exon sequences
Seq C1 exon
TGAGTCCCACAAGGGTGCGTGCCCCGCAGCCAGCATGACGAGCGAGGTGGTGGAGAATGAGTTTGAGTTTTACTCCAAGGCAGAGAAGTACTGGAAGGATGTGCCCGCCACAGTGGACGGCATGCTGGGGGGCTACGGCCACATCTCCAGCATCGACATCAACAGCTCCAGGAAATTCCTGCAGCGGTTTCTGCGG
Seq A exon
GATGGCCCCAACCGGACGGGAACAACCCGTGCCCTGGACTGCGGGGCTGGCATTGGCCGCATCACCAAGAGGCTGCTGCTGCCCCTCTTCAAG
Seq C2 exon
ACAGTGGACATGGTGGATGTGACCGAGGACTTCCTCACCAAGGCCAAGAGCTACCTGGGGGAGGAGGGCAGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017611-12-6,12-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(21.3=70.8)
A:
NA
C2:
PF058917=Methyltransf_PK=FE(38.9=100),PF044449=Dioxygenase_N=WD(100=51.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGAGGTGGTGGAGAATGA
R:
GGTCACATCCACCATGTCCAC
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]