DreALTA0018942-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000022399 | ntmt1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2055]
Coordinates
chr5:31902444-31903127:-
Coord C1 exon
chr5:31902953-31903127
Coord A exon
chr5:31902693-31902696
Coord C2 exon
chr5:31902444-31902692
Length
4 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TTTTCCTTTTTGCCTCTAAGGAA
3' ss Score
8.74
Exon sequences
Seq C1 exon
GAGTTGCACAAAGATGGAAGACTGTTTGATAGAAGACCAAACGTCCTTTTACTCAAAGGCAGAGCACTACTGGAAGGACGTCCCGCCCACTGTGGATGGAATGCTGGGAGGTTATGGCAGCATCTCCAGTATTGACATTAACGGCTCAAAAAAGTTTCTTCAGAAATTCCTTGGG
Seq A exon
GAAG
Seq C2 exon
GCCAGGGTAAGACTGGCACAGGTTGTGCTCTGGACTGTGGCGCTGGGATTGGCAGGATCACCAAGCGGCTGCTCCTGCCACTCTTTCGAACAGTAGATCTTGTGGACGTGACTCAGGAATTCCTGGATAAAGCTCGTACATACCTGGGTGAGGAGAGCAAACGGGTGGAGAACTACTTCTGCTGTGGCCTGCAAGACTTTCAGCCCCAGCCAGAGCGATACGATGTCATATGGATCCAGTGGGTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022399-5-4,5-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(21.3=85.2)
A:
NA
C2:
PF058917=Methyltransf_PK=FE(38.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGCTGGGAGGTTATGGC
R:
AACCTGTGCCAGTCTTACCCT
Band lengths:
102-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]