BtaALTA0021694-3/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012405 | PEAR1
Description
Bos taurus platelet endothelial aggregation receptor 1 (PEAR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001101300]
Coordinates
chr3:13997415-13999484:-
Coord C1 exon
chr3:13999354-13999484
Coord A exon
chr3:13997525-13997590
Coord C2 exon
chr3:13997415-13997524
Length
66 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GCCTGGCTCTGTCTCTGCAGAGA
3' ss Score
9.81
Exon sequences
Seq C1 exon
GCTCCATATCCTGAGCACCGGGACCCCCAGGATCCTCTGTGGATGCCCCTAGGCCCTGGGGCCTGAGGACCGTGACACCCTGTCCCTGGCTCACCTGAGTTTCTCAGGCCCCAGGATGCCATAGAGGCCTG
Seq A exon
AGACTTGCTCCTCCAGATCTGTGGCTACAGTGCCTCTCACCTGCTCTGCGCCTGGCCCTGTCACAG
Seq C2 exon
GGCCCTGCAATGTCACCACCCCTGCGGGCCCTCCTTCTCCTCGCCCTGGAGCTGGGGCTGGCTGCCACCCTCAACCCTAAGGACCCCAACACCTGCAGCTTCTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012405-4-8,4-7,4-6,4-5-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGTGGATGCCCCTAGG
R:
GGTCCTTAGGGTTGAGGGTGG
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development