MmuALTA0013008-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87760224-87768948:-
Coord C1 exon
chr3:87768878-87768948
Coord A exon
chr3:87760328-87760385
Coord C2 exon
chr3:87760224-87760327
Length
58 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCCTGCTTGAATCTTTGCAGATG
3' ss Score
9.11
Exon sequences
Seq C1 exon
GCTCTGTCGGCCAGCAGGACCCGTCGGTACAACACGCCGCTCTGAGCTCCGAGCTCCGAGCCCCGAGGCAG
Seq A exon
ATGTGTCCTTCCGGCTGCTGGCTGCAGTGCTGTTTTGTTACCGTGTGCCCTATCGCAG
Seq C2 exon
GCCTCTGCAATGCCACTTTGTCCCCTCCTCCTCCTGGCCCTAGGCCTGCGTCTGACTGGGACACTCAACTCCAATGATCCCAATGTCTGTACCTTTTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073-2-15,2-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF075468=EMI=PU(12.3=28.1)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGACCCGTCGGTA
R:
TGGAGTTGAGTGTCCCAGTCA
Band lengths:
133-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types