HsaALTA0006179-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000187800 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:33631]
Coordinates
chr1:156871980-156873819:+
Coord C1 exon
chr1:156871980-156872077
Coord A exon
chr1:156873649-156873709
Coord C2 exon
chr1:156873710-156873819
Length
61 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CACGGCTCAGATCTCTGCAGACA
3' ss Score
1.92
Exon sequences
Seq C1 exon
GCTTCATATCCTGAACGCTGGGATCCCCCAGGACATTCCCTGGCCCCCAGGCCCCAGGTCCCAGGCCCCAGGGCTGAGCTGTGGGCAGGCCCCACCTG
Seq A exon
ACAGGTCCTCCAGGCTGCTGGCTGCAGCGCCACTGCCCACTCTGCGCCGGTCTTGCTGCAG
Seq C2 exon
GCCTCTGCAATGTCACCGCCTCTGTGTCCCCTCCTTCTCCTGGCTGTGGGCCTGCGGCTGGCTGGAACTCTCAACCCCAGTGATCCCAATACCTGCAGCTTCTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187800-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.010
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF075468=EMI=PU(18.0=26.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCTGAACGCTGGGATCCC
R:
GGAGAAGGAGGGGACACAGAG
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)