HsaEX0046540 @ hg19
Exon Skipping
Gene
ENSG00000187800 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:33631]
Coordinates
chr1:156863512-156875216:+
Coord C1 exon
chr1:156863512-156863629
Coord A exon
chr1:156873710-156873819
Coord C2 exon
chr1:156875116-156875216
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTGCGCCGGTCTTGCTGCAGGCC
3' ss Score
9.56
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGTCAGGCTGGGGCTCGAAGTGGGGACCCTCGCCCCGTCCTCGGCTGTCCAGTCCTCCTCCTCGCAGACCCCGGCGGTTCCTACCCCAGGCCGCAGGGGAGACGGGGCCCCAAGGCAG
Seq A exon
GCCTCTGCAATGTCACCGCCTCTGTGTCCCCTCCTTCTCCTGGCTGTGGGCCTGCGGCTGGCTGGAACTCTCAACCCCAGTGATCCCAATACCTGCAGCTTCTGGGAAAG
Seq C2 exon
GGTTGTATACCGGACCGTGTACCGTCAGGTGGTGAAGACGGACCACCGCCAGCGCCTGCAGTGCTGCCATGGCTTCTATGAGAGCAGGGGGTTCTGTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187800_MULTIEX4-2/4=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF075468=EMI=PU(18.0=26.5)
C2:
PF075468=EMI=PD(39.2=82.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGGCTGGGGCTCGA
R:
GACACAGAACCCCCTGCTCTC
Band lengths:
218-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)