GgaEX7011626 @ galGal4
Exon Skipping
Gene
ENSGALG00000028622 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:410467-413641:-
Coord C1 exon
chr25:413034-413641
Coord A exon
chr25:410649-410741
Coord C2 exon
chr25:410467-410571
Length
93 bp
Sequences
Splice sites
3' ss Seq
GGCTTGGTGCTTCCATGCAGGAT
3' ss Score
7.73
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
AACGCGCTCCGGTACCGCGCCGAGGCGCGCTCTGCTCCCAGCCCGGCTCTGCTCTCAGCCGCCGCCAGATGCTGCTGTTCGGCCGGGGGACGCCGCTGCTCGCAGACCCCGAAGCTCGACCCGACCGGACCCGATCCGACCGCACCGCGGGGATCTCCCGGGTCCGCCCGGGATGCGGAGCCGCTCCCGCCCCGCTCCGCAAAGCCACCGGGACCGGACCTACACGGGGTGTCCCCACGGCGCCGCTTCGGGCCCCGGTGATGTTTTTGTTCCAAACCTGTTGGTTTCTGGCCAGCAAAGTTTAAAAAAAAAGTGCTTTTTTTTTCGGTTTTTTTTTTTTTCCCCTTTTCCGTAGTTGTCTCTGAGTCCAAACTTCCTGACAGCGGCTCCGGGCCCTCCCTCTGCTTCCGACGGCCGCGCTGAGCCTCCACCGCGCAGAGTTCGGACAGCACCGGCCCCGTCACGTCCTATCCGATCCCGGCCCGGCCCGGCCCGGCCAG
Seq A exon
GATGGTGCTGAGGACTGTGGCACTGGCACTGCACGCCTGCCTCCTGGCTGCCCTCCACCCCAGCGACCCCAACGTCTGCAGCTACTGGGAGAG
Seq C2 exon
TTTTACAGTAGCAGTGAAGGAGTCATACGCCAAACCCCACATTGTGACCTCCACCGAGCCCTGCACTGGGACACCAGGATTGCCACAGTCCTGCCCGCAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCAAACTTCCTGACAGCG
R:
ATGTGGGGTTTGGCGTATGAC
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]