HsaEX0046540 @ hg38
Exon Skipping
Gene
ENSG00000187800 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr1:156902188-156904852:+
Coord C1 exon
chr1:156902188-156902285
Coord A exon
chr1:156903918-156904027
Coord C2 exon
chr1:156904748-156904852
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTGCGCCGGTCTTGCTGCAGGCC
3' ss Score
9.56
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCTTCATATCCTGAACGCTGGGATCCCCCAGGACATTCCCTGGCCCCCAGGCCCCAGGTCCCAGGCCCCAGGGCTGAGCTGTGGGCAGGCCCCACCTG
Seq A exon
GCCTCTGCAATGTCACCGCCTCTGTGTCCCCTCCTTCTCCTGGCTGTGGGCCTGCGGCTGGCTGGAACTCTCAACCCCAGTGATCCCAATACCTGCAGCTTCTGGGAAAG
Seq C2 exon
CTTCACTACCACCACCAAGGAGTCCCACTCCCGCCCCTTCAGCCTGCTCCCCTCAGAGCCCTGCGAGCGGCCCTGGGAGGGCCCCCATACTTGCCCCCAGCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187800-'3-8,'3-5,4-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.007 C2=0.146
Domain overlap (PFAM):
C1:
NA
A:
PF075468=EMI=PU(18.0=26.5)
C2:
PF075468=EMI=FE(70.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCATATCCTGAACGCTGGG
R:
TGGGCTGGGGGCAAGTATG
Band lengths:
202-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development