BtaEX6014281 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012405 | PEAR1
Description
Bos taurus platelet endothelial aggregation receptor 1 (PEAR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001101300]
Coordinates
chr3:13996648-13999484:-
Coord C1 exon
chr3:13999354-13999484
Coord A exon
chr3:13997415-13997590
Coord C2 exon
chr3:13996648-13996752
Length
176 bp
Sequences
Splice sites
3' ss Seq
GCCTGGCTCTGTCTCTGCAGAGA
3' ss Score
9.81
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCTCCATATCCTGAGCACCGGGACCCCCAGGATCCTCTGTGGATGCCCCTAGGCCCTGGGGCCTGAGGACCGTGACACCCTGTCCCTGGCTCACCTGAGTTTCTCAGGCCCCAGGATGCCATAGAGGCCTG
Seq A exon
AGACTTGCTCCTCCAGATCTGTGGCTACAGTGCCTCTCACCTGCTCTGCGCCTGGCCCTGTCACAGGGCCCTGCAATGTCACCACCCCTGCGGGCCCTCCTTCTCCTCGCCCTGGAGCTGGGGCTGGCTGCCACCCTCAACCCTAAGGACCCCAACACCTGCAGCTTCTGGGAAAG
Seq C2 exon
TTTCACCACCACTACCAAGGAGTCGCTCTCCCGCCCCTTCAGCCTGCTCCCCTCGGAGCCCTGCAGCCGGCCCTGGGAGAGCCCGCACACCTGCCCCCGGCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012405-'4-9,'4-6,5-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATATCCTGAGCACCGGG
R:
CAGGTGTGCGGGCTCTCC
Band lengths:
223-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]