RnoEX0064790 @ rn6
Exon Skipping
Gene
ENSRNOG00000014243 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187124695-187133993:-
Coord C1 exon
chr2:187133960-187133993
Coord A exon
chr2:187125345-187125506
Coord C2 exon
chr2:187124695-187124799
Length
162 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTTGGATCTTTGCAGATG
3' ss Score
8.65
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCCATTCCCCTCCGAACTGCGAGCTCCGAGGCAG
Seq A exon
ATGTGTCCTTCCGGCTGCTGGCTGCAGTGCTGTTCTGTTGTTGGGTGCCCTGTGGCAGGCTTGTGCAATGCCACTCTGTCCCCTCCTCCTCCTGGCCCTAGGCCTGCGTCTGGCTGGAACACTCAACTCCAATGATCCCAATGTCTGTACCTTCTGGGAAAG
Seq C2 exon
CTTCACCACGACCACTAAGGAGTCCCACCTTCGCCCCTTCAGCCTGCCCCCAGCCGAGTCCTGCGACAGGCCCTGGGAAGACCCCCACACCTGCGCTCAGCCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
NA
A:
PF075468=EMI=PU(12.2=28.1)
C2:
PF075468=EMI=FE(47.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTCCCCTCCGAACTG
R:
TAGGCTGAGCGCAGGTGT
Band lengths:
138-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]