DreEX6087563 @ danRer10
Exon Skipping
Gene
ENSDARG00000017229 | megf10
Description
multiple EGF-like-domains 10 [Source:ZFIN;Acc:ZDB-GENE-080506-1]
Coordinates
chr10:16111867-16136884:+
Coord C1 exon
chr10:16111867-16112000
Coord A exon
chr10:16134576-16134694
Coord C2 exon
chr10:16136783-16136884
Length
119 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGGGTTTGTGTGAAGGTG
3' ss Score
5.58
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TGAAGGAGCGCAAGCGCGTCTGTGTTCATCACTCTATTCTTTGTGCGCTTCTGTGAAAATATTTGAGCTAATTTGGCGTTCATTTAAGCGGACCCCATGTGTTTGGACCGAACGAAAACTTTTGTTTAAAATTG
Seq A exon
GTGTTTCCTGAAATGATGTCATCCTGTGGTCCTCTTCTATTGGCTGTGTCATGCTGTTTGGTTGCTCTGACATCATCACTCAACCTGGATGACCCTAATGTCTGCAGTCACTGGGAAAG
Seq C2 exon
TTACTCAGTGACCGTGCAGGAGACGTACGCTCATCCGTTTGATCAAATCTACTACACCAGCTGCACGGACATCCTCAACTGGTTCAAATGCACTCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017229-'0-2,'0-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGTCTGTGTTCATCACTCT
R:
GCTGAGTGCATTTGAACCAGT
Band lengths:
218-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]