HsaEX6099681 @ hg38
Exon Skipping
Gene
ENSG00000145794 | MEGF10
Description
multiple EGF like domains 10 [Source:HGNC Symbol;Acc:HGNC:29634]
Coordinates
chr5:127299996-127339221:+
Coord C1 exon
chr5:127299996-127300046
Coord A exon
chr5:127331291-127331424
Coord C2 exon
chr5:127339120-127339221
Length
134 bp
Sequences
Splice sites
3' ss Seq
GGATTTTTTCTTTCTTGTAGGTT
3' ss Score
10.27
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATTATCATTGCAAATCCATTAAAGAAGGAGAAGCAAGCGGATTTCAGAGAG
Seq A exon
GTTGTTCTTCAGAAAAAAATGGTTATTTCTTTGAACTCATGCCTGAGCTTTATTTGTTTATTGTTATGCCACTGGATTGGGACAGCATCACCTCTGAATCTTGAAGACCCTAATGTGTGTAGCCACTGGGAAAG
Seq C2 exon
CTACTCAGTGACTGTGCAAGAGTCATACCCACATCCCTTTGATCAAATTTACTACACGAGCTGCACTGACATTCTAAACTGGTTTAAATGCACGCGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145794-'4-3,'4-1,6-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF075468=EMI=PU(12.3=23.1)
C2:
PF075468=EMI=FE(46.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATTGCAAATCCATTAAAGAAGGA
R:
GCCGCGTGCATTTAAACCAG
Band lengths:
146-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains