Special

GgaEX7004786 @ galGal4

Exon Skipping

Gene
Description
multiple EGF-like-domains 10 [Source:HGNC Symbol;Acc:HGNC:29634]
Coordinates
chrZ:56172597-56201137:+
Coord C1 exon
chrZ:56172597-56172815
Coord A exon
chrZ:56198225-56198357
Coord C2 exon
chrZ:56201036-56201137
Length
133 bp
Sequences
Splice sites
3' ss Seq
ATATATATATATTTTTACAGGCT
3' ss Score
7.31
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
CCGGGATGCTGCCCCCCGCGCGGGCGGAGGGGCCGGGGGCGGACCGGGCCGTGCCGTCGGCGGGGCGGGATGGAAGGAGGGAGAGAGGGAGAGAGACGGAGGGAGGGGCTGCGCCCCGCCGCACACACCGCCCCTCGCCCGGCGCAGCGGCAGCGGCGACCCGGCGGCGGAGCGGCGGTACGCAGCGGCCGCTCGGACGGGGAGGGCGCCCGCGGACAG
Seq A exon
GCTACCTTTTCGAAAAGATGTTTCTTCATTTGAACTCCTTTTTTGGATTCCCTGTTATACTCCTGTACCATTGGCTGGGGACGACTTTATCTTTGAATCTTGAAGATCCAAATGTGTGTAGCCACTGGGAAAG
Seq C2 exon
TTATTCAGTTACAGTGCAAGAGTCATATCCACATCCTTTTGATCAAATTTACTACACCAGTTGTACTGACATCCTAAACTGGTTTAAGTGCACACGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.972 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
ENSGALT00000023694fB9353


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGGAGAGAGGGAGAGAG
R:
TGTGTCGTGTGCACTTAAACCA
Band lengths:
246-379
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]