RnoEX0053760 @ rn6
Exon Skipping
Gene
ENSRNOG00000013674 | Megf10
Description
multiple EGF-like domains 10 [Source:RGD Symbol;Acc:735084]
Coordinates
chr18:52215682-52267968:+
Coord C1 exon
chr18:52215682-52216391
Coord A exon
chr18:52260507-52260639
Coord C2 exon
chr18:52267867-52267968
Length
133 bp
Sequences
Splice sites
3' ss Seq
TATTGTTTTTCTTCCTGCAGATT
3' ss Score
11.78
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
TCACTCTCTCAAGCCCCGTGGTGAGTCTTAAGTTTGCCAACTTCTTGACTCAGTCACTGACTGGGGTCCCAGGAGTCCGGCCGGAAGGAGATTGCAGGTTTGGAGGGACCGCAAGCGAGCGACATCGCTCCCCCTCCCCAAACCTCCCCCCCACCGGCCACTGTCCCGGAGGCAGCAGCTGCAGCAGAGGCAACTGCTCGCATCCCAGCCGGGCTCGGGTTACCGCCTTCTTCCTCCAGCATCTCCTGCCAGACAGGGAAAAGCTTGATCAAGTTTGCAGCAGGACTCGGTCCCTGTGCAAAACTGGGGCTCCGGGACGGGCCTGCTTCCCCGCGTCCGCATCTCCAGAGCTTAAGCAAGACTAGCATACATTGCTTTCTCCTGGGACTCTGCTTGGAAGCCAGCAGCCGCGGTTGGGAAAAGATTTTGAATCTCGGCTGGAGTGGGTGAAGACCAGGGGAAAACAGGTTGCACTGCCAATCACAGCATTTCAGGACCGG
Seq A exon
ATTGTTCTTCAAAGAAAATGGCTATTTCTTCAAGCTCCTGCCTGGGCCTCATCTGCTCACTGCTGTGCCACTGGCTGAGGGCAGCATCCTCACTGAACCTGGAAGACCCCAATGTATGCAGCCACTGGGAAAG
Seq C2 exon
CTACTCAGTGACTGTGCAGGAGTCTTACCCACATCCCTTCGATCAGATTTACTACACAAGCTGCACTGACATACTGAACTGGTTTAAATGCACTCGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013674-'1-2,'1-1,6-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF075468=EMI=PU(12.3=23.1)
C2:
PF075468=EMI=FE(46.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTTTGCAGCAGGACTCG
R:
ACTCCTGCACAGTCACTGAGT
Band lengths:
255-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]