MmuEX6001652 @ mm9
Exon Skipping
Gene
ENSMUSG00000024593 | Megf10
Description
multiple EGF-like-domains 10 [Source:MGI Symbol;Acc:MGI:2685177]
Coordinates
chr18:57292744-57349256:+
Coord C1 exon
chr18:57292744-57293384
Coord A exon
chr18:57340123-57340255
Coord C2 exon
chr18:57349155-57349256
Length
133 bp
Sequences
Splice sites
3' ss Seq
CGCTGTTTTCCTTCCTGCAGATT
3' ss Score
12.69
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GGTGACTCCAAGTTTGCCAACTTCTTGACCCAGTCACTGACGGGGGTCCCAGGAGTCCGGGCCCGGAAGGAGCTTGCAGGTTTGGAGGGATCGCGAGTCAGCAACATCACTTCCCCTCCCCAAACCTCCCCCCCCCCGCCCCCCCACCGGCCACTGTCCTGGAGGCAGCAGCTGCAGCAGCGGCAACTGCTCGCATCCCAGCCGGGCTCGGGTTACCGCCTTCTTCTTCTAGCATCTCCAGCCAGACAGGGAAAAGCTTGTTCAAGTTTGCAGCAGGACTCGGTCCCTGTGCGTGCGAACCTGGGGCTCCGGGACGGGCCTGCTCCCCGGCGTCCCCACCTCCAGTGTTTAAACAAGACCCGCAAACATTGCTTTCTCCCAGGACTCTGCTTGGAAACCAGCAGCCGCTGTTGGGAACAGATTTTGAACAGATTTTGCTGGAGTGGGTGAAGACCAGGGGAAAACAGGTTGCGCTGCCAATCACAGCATTTCAGGACCCG
Seq A exon
ATTGTTCTTCACAGAAAATGGCGATTTCTTCAAGTTCGTGCCTGGGCCTCATCTGCTCACTGCTCTGTCACTGGGTGGGGACAGCATCCTCCCTGAACCTGGAAGACCCCAACGTATGCAGCCACTGGGAAAG
Seq C2 exon
CTACTCGGTGACTGTGCAGGAGTCGTATCCACATCCCTTCGATCAGATCTACTACACAAGCTGCACCGACATCCTGAACTGGTTTAAATGCACACGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024593-'0-3,'0-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCCCACCTCCAGTGTTTA
R:
ATGTCGGTGCAGCTTGTGTAG
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: