Special

BtaEX6039601 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus multiple EGF-like-domains 10 (MEGF10), mRNA. [Source:RefSeq mRNA;Acc:NM_001046451]
Coordinates
chr7:27942050-27998816:-
Coord C1 exon
chr7:27998684-27998816
Coord A exon
chr7:27952042-27952174
Coord C2 exon
chr7:27942050-27942151
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGAATTTCTTTTTCTCGTAGGTT
3' ss Score
9.36
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GACTCCGAAGTATCGCTCTTTTGGGGACGCTGCTCGGAACCGAGCTGCGCCTTTTGGAACAGATTCTGTTTATCCGCTGGCGCTGCGTCAAAACCCGGGGGAAAGTGTTGGGCTGTGAATCTCAGGATCTCGG
Seq A exon
GTTGTTCTTCAGGAACAATGGTTATTTCCTCGAACTCATGCCCGGGCTTTATCTGTTTATTGTTATGCCACTGGATCAGGACGGCATCATCTCTGAACCTTGAAGATCCCAATGTGTGCAGCCACTGGGAAAG
Seq C2 exon
CTACTCTGTGACTGTGCAAGAGTCATATCCACATCCCTTTGATCAAATTTACTACACTAGCTGCACCGACATTCTGAACTGGTTTAAATGCACGAGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000329-'0-2,'0-1,5-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref, Alt. ATG (>10 exons))

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NA
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGTATCGCTCTTTTGGGGA
R:
GCCTCGTGCATTTAAACCAGT
Band lengths:
226-359
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]