DreEX0054592 @ danRer10
Exon Skipping
Gene
ENSDARG00000060753 | pear1
Description
platelet endothelial aggregation receptor 1 [Source:ZFIN;Acc:ZDB-GENE-091230-1]
Coordinates
chr16:30480114-30525700:+
Coord C1 exon
chr16:30480114-30480316
Coord A exon
chr16:30520680-30520787
Coord C2 exon
chr16:30525599-30525700
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTCCTTACGGCAGGAT
3' ss Score
8.6
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCATTGGATAGAGATACAGCGATTGGTTACGCGCATAGCGGTCACAGCGATCACTTTGGAAGCAAGTCAAGTCTTCGAAAATTATTTACCGGTTTATAGTGTAAAGAAGGAGACACATCTGCTGTAAGAGTATCTTCGTTGTTCTCCAAAGGCAGCACAGCAGACCTTTGCTTAGTTGAGTCCAATGCCACTTCATCAGTAAG
Seq A exon
GATGAAGACGGCGGAGATCTGTGTGGTCCTGTTTGTCTTGGGCTGTGTGTGTGAACTGTCATTGTCTTTGGACCCCCGAGATCCAAATGTGTGCAGTTTATGGGAAAG
Seq C2 exon
TTTCACCACTTCAGTGAAGGAATCATACGCTCAGCCTTTCGACCAAATGTCTGAAGAGCCCTGCTCTGAACCCTGGAGCGCTAACAAATGCACCCGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060753-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCACAGCGATCACTTTGGA
R:
CATTTGTTAGCGCTCCAGGGT
Band lengths:
254-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]