BtaALTA0022769-4/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105649957-105657648:+
Coord C1 exon
chr11:105649957-105650106
Coord A exon
chr11:105657119-105657584
Coord C2 exon
chr11:105657585-105657648
Length
466 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
CCAGGTCTCCTACATTGCAGGTG
3' ss Score
6.91
Exon sequences
Seq C1 exon
GTCACCAGTTTGGGTTCCATACTGTGGGCAGCAAGTGGGACTCGGGGAACGCCGCCAGCAACCTCTCCACAGTGGCCGTCATGCCAGTGTCGGAGGACGTGCCCCTCACCGCCTTCACCCTGGAGCTCAAGCACGCCCTCAGCGCTATTG
Seq A exon
GTGGATTATTTACCATCTGAGCCACCCTGTAGATGGAAGAACAAGCTGACCCCAGAGACAGCATGTGAAAGCATGCGTCTCCATCCTGGTAAACCACATCTGCTGGAATCCAGCCAGCCACTGACTTGGGTTGGGGAAGTTGTCTGATCTTGCATTTTACAAGCTTGTGTTTCCCCTGCCCCCAGCACACACACAGTTTCAGAGCTGCAGAAATTCAAGCCCAGTGTGTACAGAGGAGGAGACTGAGGTTCAGAGAGGCTGCCCGTCCCTGTGCCTGGTGCAGCCCTTCCCTTGGCACACCGCAGGCTCACCTGCCCGGAGGGTCTCCTTCAGGGCCACAAGCACTTTCCCGAGAGCTGTGAGAGGTTTCTGCTTTGCCGACAAGCAGATTCCAGGAGAAGGAAGGGCCTTACGGCTCCTCCGAGGTGGGCTGTGGCAGTTTTCTGCATCTGGTGGTGGTTTTTAG
Seq C2 exon
GCCCTGCCCTGCTGCTGACCAGTGACAGCATAAAACAGCGCCTTGGCTCTGCTGCTCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126-31-33,31-32,31-31,31-30-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=NA C2=0.233
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCAGTTTGGGTTCCATACT
R:
CTGTCCAGAGCAGCAGAGC
Band lengths:
214-680
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development