BtaEX0027749 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105649957-105657920:+
Coord C1 exon
chr11:105649957-105650106
Coord A exon
chr11:105657585-105657648
Coord C2 exon
chr11:105657752-105657920
Length
64 bp
Sequences
Splice sites
3' ss Seq
CATCTGGTGGTGGTTTTTAGGCC
3' ss Score
6.77
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTCACCAGTTTGGGTTCCATACTGTGGGCAGCAAGTGGGACTCGGGGAACGCCGCCAGCAACCTCTCCACAGTGGCCGTCATGCCAGTGTCGGAGGACGTGCCCCTCACCGCCTTCACCCTGGAGCTCAAGCACGCCCTCAGCGCTATTG
Seq A exon
GCCCTGCCCTGCTGCTGACCAGTGACAGCATAAAACAGCGCCTTGGCTCTGCTGCTCTGGACAG
Seq C2 exon
TATCCACGAGTACCGGCTGTCCAGCTGGCTGGGGCAGCAGGAGGACATCCACCGGATCGTGCTCTACCAGGCGGACAGCACACTCACGCCCTGGACCCAGCGCTGCATCCGGCAGGCAGACTGCATCCTCATCGTGGGCCTGGGCGAGCAGGAGCCCACGGTTGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126_MULTIEX3-2/6=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=0.233 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000016089fB5338
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCCAGTGTCGGAGGAC
R:
TAGAGCACGATCCGGTGGATG
Band lengths:
138-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development