GgaEX1044849 @ galGal4
Exon Skipping
Gene
ENSGALG00000008736 | PNPLA7
Description
patatin-like phospholipase domain-containing protein 7 [Source:RefSeq peptide;Acc:NP_001124214]
Coordinates
chr17:1645940-1654840:+
Coord C1 exon
chr17:1645940-1646089
Coord A exon
chr17:1653936-1653999
Coord C2 exon
chr17:1654672-1654840
Length
64 bp
Sequences
Splice sites
3' ss Seq
GAACCACTCTGTTCTTTCAGGTC
3' ss Score
10.46
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCCATCCTTTTGGATTGCACAGCCCAAGCAGCAAATGGGATGCCGGAAATCCTGCCAGCAATCTCTCCACAATAGCAATTATGCCGGTGTCTGAAGAGGTGCCACTCACTGCTTTCACTCTGGAGCTCAAGCATGCTCTTAGTGCTGTGG
Seq A exon
GTCCTGCCTTGCTGCTCACAAGTGATAACATCAAACAGCGGCTGGGTTCTGCTGCACTGGACAG
Seq C2 exon
TATCCATGAGTACCGCCTGACGAGCTGGCTGGGCCAGCAGGAGGACATCCACCGCATCGTCCTGTACCAGGCAGACAGCACCCTTACTCCGTGGACTCAACGCTGCATCAGGCAGGCTGACTGCATCTTGATAGTGGGACTGGGAGACCAGGAGCCCACTGTTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736-'34-37,'34-36,37-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTGGAGCTCAAGCATGC
R:
GCGTTGAGTCCACGGAGTAAG
Band lengths:
138-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]