RnoEX0067751 @ rn6
Exon Skipping
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2237347-2248564:+
Coord C1 exon
chr3:2237347-2237496
Coord A exon
chr3:2247634-2247697
Coord C2 exon
chr3:2248396-2248564
Length
64 bp
Sequences
Splice sites
3' ss Seq
AAATGGATGGTTGTTTTCAGGTC
3' ss Score
6.23
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTCACCAGCTTGGATTTAACACAGCAAGCAGCAAATGGGACTTGGGAAACCCCCCTGGCAACTTGTCCACGGTGGCAGCAATGCCTGTCTCTGAAGATGTGCCCCTAACTGCCTTTGCCCTGGAGCTCCAGCATGCCCTCAGTGCCATTG
Seq A exon
GTCCTGTCCTGCTGCTGACCAGTGACAACATCAAACAACGCCTTGGTTCTGCTGCTCTAGACAG
Seq C2 exon
CATCCATGAGTACCGGCTGTCCAGCTGGCTGGGGCAGCAGGAGGACATCCACCGGATTGTGCTGTATCAAGCAGACAGCACACTCACACCCTGGACCCAGCGCTGCATTCGTCAGGCTGACTGCATCCTCATCGTGGGCTTGGGCGATCAGGAGCCCGCACTGGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGATGTGCCCCTAACTGCC
R:
TGTGAGTGTGCTGTCTGCTTG
Band lengths:
146-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]