MmuEX0036066 @ mm10
Exon Skipping
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:25029507-25039771:+
Coord C1 exon
chr2:25029507-25029656
Coord A exon
chr2:25038837-25038900
Coord C2 exon
chr2:25039603-25039771
Length
64 bp
Sequences
Splice sites
3' ss Seq
AAATAGGTGGTTGTTTTCAGGTC
3' ss Score
4.95
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTCACCAGCTTGGATTTAACACAGCAAGCAGCAAATGGGACTTGGGGAACCCGCCTGGCAATCTGTCCACAGTGGCAGCACTGCCTGCTTCTGAGGATGTGCCCCTAACCGCCTTTGCTCTGGAGCTCCAACATGCCCTCAGTGCCATCG
Seq A exon
GTCCTGTCCTGCTGCTGACCAGTGACAACATCAAACAACGCCTGGGTTCCGCTGCTCTAGACAG
Seq C2 exon
CATCCATGAGTACCGGCTCTCCAGTTGGCTGGGCCAGCAGGAGGACATCCACCGGATTGTGCTGTATCAGGCAGACGGCACACTCACACCGTGGACCCAGCGCTGCATCCGGCAGGCTGACTGCATCCTCATCGTGGGCTTGGGTGAGCAAGAGCCAGCAGTAGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.039 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCCTGCTTCTGAGGATG
R:
CACAATCCGGTGGATGTCCTC
Band lengths:
133-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types