DreEX0056703 @ danRer10
Exon Skipping
Gene
ENSDARG00000040002 | pnpla7b
Description
patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
Coordinates
chr5:24551926-24554341:-
Coord C1 exon
chr5:24554192-24554341
Coord A exon
chr5:24554037-24554100
Coord C2 exon
chr5:24551926-24552094
Length
64 bp
Sequences
Splice sites
3' ss Seq
GTGTTAATTAATTTGAATAGGTC
3' ss Score
6.06
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGCGCAGTCTGGGTTTTCACTCCCCAACCAGTAAGTGGGACGCAGGTAATCCAGCTGCCAATCTGTCGACGGTCACCATTCTGCCTGTGTCTGAGGAAGTGCCACTGACTGCCTTCACACTGGAGCTGCAGCATGCTCTCAGTGCTATTG
Seq A exon
GTCCCACTTTGCTTCTAACCAGTGACATTATCAGACAGCGCCTGGGTGTTGCTGCCTTGGACAG
Seq C2 exon
TGTTCACGAGTATCGTTTGTCAAGCTGGCTGGGTCAACAAGAGGACATCCACCGCATTGTTTTATATCAATCTGATGGTTCTCTGACTCCATGGACTCAACGGTGCATTCGACAGGCAGACTGCATCATCATCGTGGGTCTGGGAGAACAAGAGCCCACTGTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040002-'26-31,'26-30,27-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCACCATTCTGCCTGTGTC
R:
AACAATGCGGTGGATGTCCTC
Band lengths:
141-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]