BtaINT0114825 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105649957-105657648:+
Coord C1 exon
chr11:105649957-105650106
Coord A exon
chr11:105650107-105657584
Coord C2 exon
chr11:105657585-105657648
Length
7478 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
CATCTGGTGGTGGTTTTTAGGCC
3' ss Score
6.77
Exon sequences
Seq C1 exon
GTCACCAGTTTGGGTTCCATACTGTGGGCAGCAAGTGGGACTCGGGGAACGCCGCCAGCAACCTCTCCACAGTGGCCGTCATGCCAGTGTCGGAGGACGTGCCCCTCACCGCCTTCACCCTGGAGCTCAAGCACGCCCTCAGCGCTATTG
Seq A exon
GTAAGCCCTGCCCAAGGCCACCTGAGGTCCCCTGGGCCCCCTCCTCCCCCTGCCTCTCAGTCCTTCCAGGTTCTCCTGAAAGAGCGCTCAGCGTTGCCCGCAAGGCTGGTAACCCTGGGTGGGGGTGGGGGTGGGGGTGCGGTGCTGGGGAGGGGACCACCACAGTGCGACGGAGCCTCCGGACAGTCTTGATGGGGACCCGACGCCACAGGAGCTGGTGTGAGTCACACTGCACTCCTCCCAGCTGAACCCACAGAGGCCCCTGCGCCCCCTGCAGAAGCCGTCTTGGGGTGGGCGCCTCCAGCTGCCCCACCACTTGGAGAGCACGCTGCAGTGGCCAGGGAGCTGGCTGACCACGTGGGAACACCCTCAGTGAGGGTCCGTCAGCTTAGGTCTTGCTGCCAAGATCCTGACAGCTGGGAAGTTTGGGGCTCAAGAACAAGAAACTGAAATTCTGGAGAATTCTTAGGAATTCTCCAAATCATAAAGCATTCCATATTCTTAACACTTTACTCATATGGTTTTATATAATTGTAAGTGATCATAGTAATAGACAACAAGTCAATTTTCTGAGACAGGGCTATTTTACTGGCTTCAAGGGGTAATAGAAGGCATTGAATAGATGCCAAACAAAAATGATTTACAAAATTGAGCTACTATTATAAATATTCAATATTTAAAAGTTATTCTCCAAGTGAAAATTTAAATCACAGAAAGCATTAATTTCCATTAGTCTTGGTCTCTGTTTCATAACAAACGTTCTGGATCTGGAAGCCTCCACTTGTTTTCAGTGAGGTTGGTCAGCCTGTCCAGGGCGCACCAAGAGACCTGCAGTTGTACAGTGCAGACGTACGGACTCATAATAGTGGCTTGTTCCCTTTGAAAAAACGACTTGTATTTTGAAATAATTATAGATTCATAGCAAGTTATAAAAATAGTAAAGAGAGAGCCATATGCCAGCCCCCACCCCTGGTTATGTAACCACAGCACAGCATCCAGACCAGGAAATCGGTGTCCGTACGGTGCACTCATGCGACTGCATGTGTGTCCGTGTGAATTTCTGTTTCTGCAAGGAACGGGGGTCACGACAGGGACGGTACTGGACTGTCGGTGGCGTTGGGTGGCAGTGACGTCCAAGCGATGTGAGGACGAAGCAGCCTCCTGCCTCATTCCTGGTCTTGGGGAAAAGCTTTCAGTCTTTTGTCTTTGAGTAGGGTGTTAGCTGTCAGTCTCTCACGGATGGCCTCTAACTTAGGAAGGTTTCTTTCTATTCATATTTTGTTGAGGGTTTATATCATAAAAAGATGTTAAATTTTGTCAGTGCTTTCTTTTTCTGCAGCAATTGAGATGATCATATTTCCCCCCTTTGTTCTGTTGATGTGATTTATCACACTGATTGATACTCACGAATTGAGTCATTCTTGCACTCCAGGAGTAGCTCCCACTTGGTGGGGTGTGTAGGCCTTTTACTGCCCCTGGGTTTGGTCAGCTCCTCTCTCATTCATGAATTGAGTCATTCTTGCACTCCAGGAGTAGCTCCCACTTGGTGGGGTGTGTAGCCCTTTTACTGCCCCTGGGTTTGGTCAGCTCCTCTCTCATGGAGGGTTTCGCACTGTCAGGGTTGCCTGTCTGTAGTTTCTTGTGGTGTCCTGGTCCCACCGTGACTCTGGTGAGGGGGTACTGGTGCTAGCCCCATGGAATGAGTCAGGAAGTGTTCCCTCAGAGTCAATATTTTGGAAGACTTTGAGGAGGACTGGTATTAATTTTTCTTTTAACGTTTGGTAGAGGATTTTCCCTGGTGGTTCAGTAGTTAAGAATTGGCCTGCCAGTGCAGGGGTGACAGGTTCCTCCCTGGTCCTGGAAGACTGCACGTGCCGCAAGGCAGCTCAGTCCATGCGCCACAGCTACCGAGCTCAAGCTCGGGCCTCAGTGCTGCAGCTCTCCAGCCTGCATCCCGTGGGGCCCACGCTGCACAACGAGGGAAGCCCGGGCCCCACAGCCGGAGAGCGGCCCCGCCCGCCGCAGCTGGAGGAAGCCTGTGCCCGGGAGCACAGCCCCAGCTCGGCTCTGGCTCTGTGTTTAGTGTGAGATTCTTCTGTTACTTAAGGTACAAAGCCAGCTGTTGGTCAGAGATCTCTCTTCTTCCTCAGAGGAGGCATTCATAGCCATCAGCGTCCCTCCTTGCAGGGCTCTCGCTGTGTCCTCTACATTCTGGAATGTTGTGCTTTTGTTTTCATTTGCTTCAAGTATTTCCTCGTTTCTTTGTGATTTCTTTGACTCATTGGTTGTTTAAACATTTAATTTCCATATACTTGTGAATTTTCCATTTTCATACCATTGTGATCAGAAAAGATACTTTATGTAAGTCCAGTCTTTACCTGCCTCCTGAGGAACTTGTATGCAGATCAAGAAGCAACAGTTAGAAGAACTGGATGTGGAACAACTGACTGGTTCAAAATTGAGAAGGAGTGCGTCAAGGCTGTGTATTCTTACCCTGCTTATTTAACTTATATGCAGAGTACATCATGCTAAATGCCAGGCTGGATGAACCACAAGCTGAAATCAAGATTGCCAGGAGAAATATCAACAAACTCAGATATGCAGATGACACAACTCTAATGGCAGAAAGTGAAGAGAAACTAAAGAGCCTCTTGATGAGGGTGAAAGAGGACAGTGAAAAAGCTGGCTTAAAAGTCAGTATTCAAAAAACTAAGATCATGGCATCTGATTCCATCACTTCATGGCAAATACATGGGGAAAAAGTGGAAACAGTGACAGACTTTAATTTCCTGGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTGAAAGACACTTGCTCCTTGGAAGAAAAGTTATGACAAACATAGACAGCATGTTAAAAAACAGAGACATCACTTTTCTGACAAAGATTCGTCTAGTCAGAGCTATGGTTTTTCCAGTAGTCATGTATGGATGTGAGAGTTGGACCATAACGAAGGCTGAACGCCCAGGAATTGATGCTTTCAAATTGTGATGCTGGAGAAGACCCTTGAGAGTCCCTTGGACTGCAAGGAGATCAAACCAGTCAAACCTAAAGGATATGAACCCTGAATATTCATTGGAAGGACTGATGTTGAAGCTCTAATAATTTGGCCACCTGATGGGAAGAGCCAACTCACCAGAAAAGACCCTGATGCTGGGAAAGATTGAAGGCGGGAAGAGAAGGGGGCAACAGAGGATGAGATGGTTGAATGGAATCACCGACTCAATGGGCATGAGTTTGAGCAAACTCCAGGAGATAGTGAAAGATGGGGAAGCCTGCCTGACATGCTGCAATCCATGGAGCTGCAAAGAACTGGACCCAACTTAGCGACTGAACAACAGCAACGGAAGACTTGTGGCCCAGCATCCAGCCTCTTCTGGGGGAAAGGGAGAGTGTGTGGTGTGCTGGGCTCCTGGGCACTTGTGACTGTGAGGCAGTGTCCCATCTAGCTTGGATCTGCATTTCCCAGTAGCTGAAAAGTCTGTCTCGCAGCCACTGGGATCCCTTCTTCTGAGTGCCTGTCAAGTTGCCCACTGTTTTGTGGGGCTGTTATCTTTTCCTTGTCAATGGGCAGTGTGGATGCAGTTGCTTTTTTTCGGATGAAAATGCAGATATCTTTACCTCTGTGGCTTGCTTTTTTATTCTTTTAATGATGTCTTTCGACAAATGCTTCCTAGGTGGCACCAGTGGTAAAGAATCCACCTGCAGTGCAGGAGACACAAGAGACACAGATTTCACCCAGGTCAGGAAGATACTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACTGGTGGGCTGTAGTCCATGGGGTTGCAAAGAGCTGGACATGACAGCATGCATCTAGTTCACTGACTTTGACAAATGCAAGTTGTTAATTCTAATATGGACCAATTTATTTATCATTTTTTCCCTATATTGTTACTGAATTTTGCATTTTATTGAAGAAATTTCATCCTATCCCCAAGTCATGAAGAGGTTCTTTTAAAAACATTATTGTATTACCTGTCAAGTTTACAATCCATTGGGGATGGTTTTGATTATGAAATAAATAGAGTCAGGATGCATTTTTCTGTAGGCTCCTCAGCTGACCCAGAGCCCTCACTCAGAACCAATGGACCCTGCCCTGAGGGTTCCTTTGCTGAAAGGTGATCACATCTGTGAAGGGTGTTTGTAGAGAGAGGATCTAGGCCAATGGCCTTGTCTTCCAGCTTCAGGGTTTCAGCCACTTCCTCTGGCTTCCACAGTTTGGAGGAGAGGCTGTGTAACAGCCAGGCTGACAGTGACTCTCCAGGCCTGAGCAGCCCCCACAGAGCCGACTCGGAGTAACTGGGAGTCACCCTGTATCCATGCACTACCCTGGCCCTGTCCATGGCTGGGCCTTAGGCAGACCCCTCCCAGGGACAGGCTAGTCACCACATTCCTAACTGGCCAGGACTGTAGCCAGCGCCTTGAGAGCCCAGGACACTCCTAGGGGCTCCACACTTTCCCAAGGGCCTCCTCAGGACCCTCGAGTCCAGGCAGAGGCCTAGAGCAGATGTGCACCGAGGGTCAGAGAGAGCAGCCACCGTCTCCAGGGCCTCAGGCAGGGCTTCTCAGTGTTCCCGCAGCAGACATGGCCTGCCTGTCCCGTCTCGTCCTAGACTTCCAAGAGGTGAACGGAACTAGTCACTGCAGTGCCCAGGAGTGCCCGCCCTTGCAGGCTGAGAGCCCCTCCAGCCCCGAGAGGGGTCCCTCTCTGTCAGGCCCTTGTGGGTGCCCGACCCCCAAGGCAGGAGTGCGGCCTTAGTGGGACCAGCGCCCTCTGTCCCGACCCCCAGAGGAGTTGCTCCCCCACTTCCACAGGCTTCTGCCTTTGAGTCAGAGCTGCTCCCCTGCAGGTCAGACCAGCGGCCACCTCACAGGCACCACCCTGTGGTTCAATTCAGTCACTCATTCATGTCCGACTCTTTGCGACCCTGTGGACTACAGCATGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGCTTGCTCAAACTCATGTCCATCAAGTTGGTGATGCCATCCAGATATCTCATCCTCTGTCATTCCCTTCTCCTCCCGCCTTCAATCTTTCCCAGCATCAGGGTCTTTTCCATTGAGTCAGTTCTTCGTATCAGGTGGCCAAAGTATTAGAGCTTCAGCTTCAGCATCAGTCCCGCCAATGAATAGTCAGGACTGATTTCCTTTAGGATTGACTGGTTGCATCTCCTTGCTGTCCAAGGGACTCAAGAGTTTTCTCTAGCACCACAGTTAAAAAGCATCAATTCTTCAGCACTCAGCTTTCTTTATGGTCCAATTCTCAGATCCATACATGACTACTGGAAAAACCATAGCTTTGACTAGACGAATCTTTGTCAGAAAAGTGATGTCTCTGCTTTTTATGGTCGTAACTTTTCTTCAAGGAGCAAGTGTCTTTTAATTTCATGGCAGCGGTTACCATCTCCAGTGATTTGGAGCCCAAGAAAATAAAATCTGTCACTGATTCCACTATTTCGCCATCTGTTGGCCATGAAGTGATGGAACCGGATGCCATGATCTTAGTTTTTTGAATATTGACTTTTAAGCCAGCTTTTTCATTCTCCTCTTTCACTTTCATCAAGAGGCTCTTTAGTTCTTCCTTGTTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCAACAATCTTGAGTCCAGCTTGTGTTTCATCCAGCCCAGTGTTTCTCATGATGTACTTTGCATGTGAGTTAAATAAGCAAGAGACAATATACAGCCTTGATGTACTCCTTCCCCAATTTGTAACCAGTCCATCGTTCCATGTCCAGTTCTAACTGTTGCTTCTTGACCTGCATGCAGATTTCTCAGGAGGCAGGTAAGTTGGTCTGCTATTCCCATCTCTTTCAGAATGTTCCACAGTTTGTTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAGTAGATGTTTTTCTGGAATTCTCTTGCTTTTTCTACATTCCAACGGATGATGGCAATTTGATCTCTGGTTCCTCTCCCTTTTCTAAATCCAGCTTAAACATCTGGAAGTTCTCAGTTCATGTACTGGCTTGGAGAATTTTGAGCATTGCTTTGCTATTGTGTTGTGAGATGAATGCAATTGTGTGGTAGTTTAAGCAGTCTTTGGCATTACATTTCTTTGGGATTGAAATGAAAACTGACCCTTTCCAGTCCTGCGGCCACTACTGAGTTTTCCAAATTTACTGGCATATTGAGTGCAACACTTTCACAGCATCACCTTTTAGGACTTGAAATAGCTCAGCTGGAATTCCATCACCTCTACTAGCTTTGTTTGTAGTGATGCTTCCTAAGGCCCACTTGAATTCCTGCTCCAGGATGTCTGGCTTTAGGTGAGCACTCCACTGTGTGGAACACGCTCTTATTCTGTGTGCTGTCAAGAAAGCAGACACCTCCAGTAAAACACAGGCAGTGATTTCCTGTCTCTCCCCTTCTAATCGTGAGCCCTCAGGGAAGTTCAGATGCCAGTGCAGGGGGAGCCTGGGCTTCTCTTGCTGCAGCAGGACTTCTTCATCCTCAGGGTAGTCCAGCAGCCTTCCTGACCCTGAGGGCCACTGTCTCAGCTTTTGTCCCCACCCCTGGCAGCCCTCCTGGTTGAGCAGATGTGTCTGTCCGAACAGCAGCTCCCTTCTCCAACAGATCTTCCTGACCCAGGAATCGAACTGGGGTGTCCTTCATTGCATGCAGATTCTTTACCAGCTGAGCTATCAGGGAAGCCCAAAGGAAAGTGAAAGTCACTCAGTTGGGTCCAACTCTTTGCAACTCCGTGGACTCAGTCCATGGAATTCTTCAGGCCAGAATACTGGAGTGCGTAGCCTTTCCCTTCTCCAGGGGATCCTCCCAACCCAGGGACTGAACCCAGGTCTCCTACATTGCAGGTGGATTATTTACCATCTGAGCCACCCTGTAGATGGAAGAACAAGCTGACCCCAGAGACAGCATGTGAAAGCATGCGTCTCCATCCTGGTAAACCACATCTGCTGGAATCCAGCCAGCCACTGACTTGGGTTGGGGAAGTTGTCTGATCTTGCATTTTACAAGCTTGTGTTTCCCCTGCCCCCAGCACACACACAGTTTCAGAGCTGCAGAAATTCAAGCCCAGTGTGTACAGAGGAGGAGACTGAGGTTCAGAGAGGCTGCCCGTCCCTGTGCCTGGTGCAGCCCTTCCCTTGGCACACCGCAGGCTCACCTGCCCGGAGGGTCTCCTTCAGGGCCACAAGCACTTTCCCGAGAGCTGTGAGAGGTTTCTGCTTTGCCGACAAGCAGATTCCAGGAGAAGGAAGGGCCTTACGGCTCCTCCGAGGTGGGCTGTGGCAGTTTTCTGCATCTGGTGGTGGTTTTTAG
Seq C2 exon
GCCCTGCCCTGCTGCTGACCAGTGACAGCATAAAACAGCGCCTTGGCTCTGCTGCTCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126:ENSBTAT00000016089:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=NA C2=0.233
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development