BtaALTA0023629-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000001821 | PRRC2C
Description
Bos taurus proline-rich coiled-coil 2C (PRRC2C), mRNA. [Source:RefSeq mRNA;Acc:NM_001206655]
Coordinates
chr16:39871557-39872791:+
Coord C1 exon
chr16:39871557-39871722
Coord A exon
chr16:39872614-39872619
Coord C2 exon
chr16:39872620-39872791
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTGATGTTACTGATCTTTAGTTG
3' ss Score
4.49
Exon sequences
Seq C1 exon
ACTGATTTTAAGGGGTGTGGCAGAAGGTTCTAGACTCGATGAGTTTCCACCGAAATGTCGGAGAAGTCAGGCCAGAGCACAAAAGCAAAGGATGGGAAAAAGTATGCGACACTCAGTTTATTTAATACTTACAAGGGTAAATCATTAGAAACTCAGAAAACCACAG
Seq A exon
TTGCAG
Seq C2 exon
CTCGCCATGGATTACAGAGTCTTGGAAAAGTTGGTATTTCTCGGCGTATGCCTCCACCTGCTAACCTCCCAAGTCTCAAAGCAGAAAACAAAGGCAATGATCCTAATGTGAACATTGTACCTAAAGACGGCACAGGATGGGCTTCAAAACAAGAGCAACACGAAGAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001821-4-3,4-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PU(22.6=97.4)
A:
NA
C2:
PF070016=BAT2_N=FE(34.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAAAAGTATGCGACACTCA
R:
CCAAGACTCTGTAATCCATGGCG
Band lengths:
99-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development