MmuALTA0014278-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000040225 | Prrc2c
Description
proline-rich coiled-coil 2C [Source:MGI Symbol;Acc:MGI:1913754]
Coordinates
chr1:164653241-164655000:-
Coord C1 exon
chr1:164654835-164655000
Coord A exon
chr1:164653413-164653418
Coord C2 exon
chr1:164653241-164653412
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGATGTTACTGATCTTTTAGTTG
3' ss Score
5.85
Exon sequences
Seq C1 exon
ACTACTTTTAAGGGGTGTGTCAGGAGGTTTTGGACTAGATGAGTTTCCACCGAAATGTCGGAGAAGTCAGGCCAGAGCACAAAAGCCAAGGATGGGAAGAAGTATGCAACACTCAGTTTGTTTAACACTTACAAAGGAAAGTCCTTGGAAACACAGAAGACTACAG
Seq A exon
TTGCAG
Seq C2 exon
CTCGACATGGGTTACAAAGTCTTGGAAAAGTTGGTATTTCACGGCGAATGCCCCCACCTGCTAACCTTCCAAGTCTCAAAGCAGAGAACAAAGGCAATGATCCTAATGTGAATATTGTGCCCAAAGATGGGACAGGATGGGCATCGAAACAAGAGCAACATGAAGAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040225-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PU(22.2=97.4)
A:
NA
C2:
PF070016=BAT2_N=FE(34.5=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTTGGAAACACAGAAGACT
R:
CTTGGAAGGTTAGCAGGTGGG
Band lengths:
100-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: