HsaALTA0000895-3/5 @ hg38
Alternative 3'ss
Gene
ENSG00000117523 | PRRC2C
Description
proline rich coiled-coil 2C [Source:HGNC Symbol;Acc:HGNC:24903]
Coordinates
chr1:171512032-171513172:+
Coord C1 exon
chr1:171512032-171512200
Coord A exon
chr1:171512995-171513126
Coord C2 exon
chr1:171513127-171513172
Length
132 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTGATGTTATTGATCTTTAGTTG
3' ss Score
5.35
Exon sequences
Seq C1 exon
GACTGGGGTTTTAAGGGGTGTGGCAGGAGGTTTTGGACTCGATGAGTTTCCACCGAAATGTCGGAGAAGTCAGGCCAGAGCACAAAAGCAAAGGATGGGAAAAAGTATGCAACACTCAGTTTATTTAATACTTACAAGGGGAAATCATTAGAAACACAGAAAACCACAG
Seq A exon
TTGCAGCTCGACATGGATTACAGAGTCTTGGAAAAGTCGGTATTTCACGGCGTATGCCTCCACCTGCTAACCTCCCAAGTCTTAAAGCAGAAAACAAAGGCAATGATCCTAATGTAAACATTGTACCTAAAG
Seq C2 exon
ATGGCACAGGGTGGGCATCAAAACAAGAGCAACATGAAGAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117523-1-10,1-9,1-8,1-7,1-6-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PU(22.6=97.4)
A:
NA
C2:
PF070016=BAT2_N=FE(34.8=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGTTTTAAGGGGTGTGG
R:
TCTTCTTCATGTTGCTCTTGTTTTGA
Band lengths:
210-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains