HsaEX0007656 @ hg38
Exon Skipping
Gene
ENSG00000117523 | PRRC2C
Description
proline rich coiled-coil 2C [Source:HGNC Symbol;Acc:HGNC:24903]
Coordinates
chr1:171485551-171513172:+
Coord C1 exon
chr1:171485551-171485735
Coord A exon
chr1:171512032-171512200
Coord C2 exon
chr1:171512995-171513172
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTTCTTATGTACATCTTAAGGAC
3' ss Score
6.17
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCTCGCTCGCTCCCCCTCGGAAAGCTGCGAAAGTGCTTTGGCGGTTTGTCCATCCGCAGCTTCGGCTTTTCCAGTCTGGTGGCCCTTCCGGCCACCCCTTTAACCCCAGCTTTCCCTCCCCCTTCTTTCGATCAGAGATCGGCGGAGACCCTCGAAGTGCGCAAACTTGACACTCACCCTGACCG
Seq A exon
GACTGGGGTTTTAAGGGGTGTGGCAGGAGGTTTTGGACTCGATGAGTTTCCACCGAAATGTCGGAGAAGTCAGGCCAGAGCACAAAAGCAAAGGATGGGAAAAAGTATGCAACACTCAGTTTATTTAATACTTACAAGGGGAAATCATTAGAAACACAGAAAACCACAG
Seq C2 exon
TTGCAGCTCGACATGGATTACAGAGTCTTGGAAAAGTCGGTATTTCACGGCGTATGCCTCCACCTGCTAACCTCCCAAGTCTTAAAGCAGAAAACAAAGGCAATGATCCTAATGTAAACATTGTACCTAAAGATGGCACAGGGTGGGCATCAAAACAAGAGCAACATGAAGAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117523_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.974 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF070016=BAT2_N=PU(22.6=97.4)
C2:
PF070016=BAT2_N=FE(35.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTTAACCCCAGCTTTCCC
R:
TTGTTTTGATGCCCACCCTGT
Band lengths:
248-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development