GgaEX1046445 @ galGal4
Exon Skipping
Gene
ENSGALG00000003290 | PRRC2C
Description
proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:HGNC:24903]
Coordinates
chr8:4764004-4779945:-
Coord C1 exon
chr8:4779845-4779945
Coord A exon
chr8:4765200-4765367
Coord C2 exon
chr8:4764004-4764181
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCTGCTGTTGTTGTTTTCAGGCT
3' ss Score
10.41
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ACAGTTCTGGAGGTGCACAGTAAAAGGCTGCTGCTGGGTTATTTCTCTTAGATGTGAGTGAAGCGCCTTTGGGGAAGGATTTGTGGCTTCTGCTCTCAGGG
Seq A exon
GCTGATTTTGAGGAGTGAGCGGGCGGTACCAGACTCGATGAGTTTCCATCGAAATGTCGGAAAAGTCAGGCCAGAGTACAAAAGCAAAGGATGGAAAAACGAAGTACGCAACGCTCAGTCTCTTTAATACTTACAAAGGAAAGTCACTGGAAACTCAGAAAACCACAG
Seq C2 exon
TTGCCACACGCCATGGATTACAAAGTCTTGGAAAAGTTGCTATTTCGAGGAGGATGCCTCCCCCAGCTAACCTCCCTAGTCTCAAAGCAGAGAACAAAGGCAATGATCCCAATGTGAACATTGTGCCTAAGGATGGCACAGGATGGGCTTCAAAACAAGAACAGCACGAAGAAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003290-'4-7,'4-6,17-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF070016=BAT2_N=PU(22.5=97.4)
C2:
PF070016=BAT2_N=FE(34.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTGCACAGTAAAAGGC
R:
TTTTGAAGCCCATCCTGTGCC
Band lengths:
249-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]