BtaEX6068501 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001821 | PRRC2C
Description
Bos taurus proline-rich coiled-coil 2C (PRRC2C), mRNA. [Source:RefSeq mRNA;Acc:NM_001206655]
Coordinates
chr16:39843441-39872791:+
Coord C1 exon
chr16:39843441-39843648
Coord A exon
chr16:39871557-39871722
Coord C2 exon
chr16:39872620-39872791
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTGTTAATCTTACAGACT
3' ss Score
9.05
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATCTTGCTTCTTTTTCTCGCTCGCTATCTGCCTCTCGGGCGGCAGCGAAAGTGCTTTGGCGGTTTCTCCATCCTGTAGCTTCGGCTTTCCGGGTCCCGTGGTCCTTCCAGCCGCCCCCTACCCCTATTTCCCCTTTCCCTTTCCCCGTATCAGAACTCGGCGGAACCCCTCGAAGTGCGCAAACACACTCAGCTTGACACCCTGGCGG
Seq A exon
ACTGATTTTAAGGGGTGTGGCAGAAGGTTCTAGACTCGATGAGTTTCCACCGAAATGTCGGAGAAGTCAGGCCAGAGCACAAAAGCAAAGGATGGGAAAAAGTATGCGACACTCAGTTTATTTAATACTTACAAGGGTAAATCATTAGAAACTCAGAAAACCACAG
Seq C2 exon
CTCGCCATGGATTACAGAGTCTTGGAAAAGTTGGTATTTCTCGGCGTATGCCTCCACCTGCTAACCTCCCAAGTCTCAAAGCAGAAAACAAAGGCAATGATCCTAATGTGAACATTGTACCTAAAGACGGCACAGGATGGGCTTCAAAACAAGAGCAACACGAAGAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001821-'0-3,'0-1,4-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.974 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF070016=BAT2_N=PU(22.6=97.4)
C2:
PF070016=BAT2_N=FE(34.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTACCCCTATTTCCCCTT
R:
TTTTGAAGCCCATCCTGTGCC
Band lengths:
243-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]