RnoEX0000931 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr13:80594807-80615420:-
Coord C1 exon
chr13:80614695-80615420
Coord A exon
chr13:80596586-80596751
Coord C2 exon
chr13:80594807-80595116
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTATGCATCACAAAGACT
3' ss Score
-0.63
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGCGCAGTTTGTAAATTTATATGCTCCTCCAATCAGTTGTGTCAATGCACGGAGACAAACCAAGACGTAATTCTGGATGATTTAAGACTTCTGGAATCTTCGCAGGTGAAAAGCTTTGTCTCCCTGAGATCGCTCTGATTGACGGAACTCCCTCCTTCCAGTAGGAGGTAGCGTTACCCTCCGCCGTGGGCCAGAGGCTGTCACGTGATCTCGCAGCCTCAACCCAGGAGGGCGGTCCTGCGGAGATTTGCTATACGTACGCAGCGTCATGACGTAGCACGTAGGGGCTGGCTAGCCGCCATCTTGCTTCTTTTTCCTCGCTCGCTCTCACCCTCTCAAGAGGTAGCGAAAGTGCTTTGGCGGTTTGTACGGCCGTGGCTCGGGCTTTCCGGACCGAGCGGCCCTGCGGACGATCTCTGGAAACTCCTTCCCCTTCCTTGCCCCTAATCCGTACCCGGCGAACCTCTGGAAGCGCGCAGACTTGGTTCTCACCCTGGCGG
Seq A exon
ACTACTTTTAAGGGGTGTGGCAGGAGGTTTTGGACTAGATGAGTTTCCACCGAAATGTCGGAGAAGTCAGGCCAGAGCACAAAAGCAAAGGATGGGAAGAAGTACGCAACACTCAGTTTGTTTAATACTTACAAAGGAAAGTCCTTGGAAACACAGAAGACTACAG
Seq C2 exon
CTCGACATGGGTTACAAAGTCTTGGAAAAGTTGGTATTTCACGGCGGATGCCCCCACCTGCTAACCTGCCAAGTCTTAAAGCAGAAAACAAAGGCAATGATCCTAATGTGAATATTGTGCCTAAAGATGGTACAGGATGGGCATCAAAACAAGAGCAGCACGAAGAAGAAAAGTAAGTCAAAATCCTAAAAGAATAAAATATTTCTCTTATTGTAGGAAACAGTCTCTGCCATGCACTGAGAGTTCAGCTCAGATGTTCAATCACTCTGACATCTGTAATTCAGAGCTCTTTCATCAGATGAAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
Rn.23673_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTCTCACCCTCTCAAGAG
R:
GACTTGGCAGGTTAGCAGGTG
Band lengths:
254-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]